PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8501_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

M-type_MADS

Protein Properties

Length: 233aa MW: 26349 Da PI: 9.7494

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8501_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.4	4.5e-29	56	106	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrngi+KKA+ELSvLCda+v++i++s t k++ey s cra_locus_8501_iso_1_len_913_ver_3 56 KKIENSTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMLSGTKKFHEYTS 106 68***********************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.539	48	108	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.1E-38	48	107	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.49E-36	49	116	No hit	No description
SuperFamily	SSF55455	4.97E-30	49	119	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-26	50	70	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	50	104	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-23	57	104	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-26	70	85	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-26	85	106	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
XKGLLSLNPF PVSTSDIIPP NPYXPKLSLV DFPVADPSID RVSEEGIMGR GRIEIKKIEN 60 STNRQVTYSK RRNGIFKKAH ELSVLCDAKV SLIMLSGTKK FHEYTSPSTT TKTIIDQXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXK LIPSXKKVRN LEERHGNLLF 180 DIEAKCEDPK YGIVENAYNN SSTVALVDGV ASNLYAFSLQ PRHPNLHHGL RLT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	6e-15	48	107	1	60	MEF2C
5f28_B	6e-15	48	107	1	60	MEF2C
5f28_C	6e-15	48	107	1	60	MEF2C
5f28_D	6e-15	48	107	1	60	MEF2C

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015870777.1	5e-47	floral homeotic protein PMADS 1-like
Swissprot	Q003J2	6e-33	TM6_VITVI; Agamous-like MADS-box protein TM6

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]