PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8503_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 197aa    MW: 22518.3 Da    PI: 5.4379
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8503_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.3e-15251031498
                                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                         + l +p  f++++g k ++   + l+ ++g sW+++l    +++r++l+kGWkeF++   ++++ f+vFk+ g+s
  cra_locus_8503_iso_2_len_727_ver_3  25 QGLKIPVAFMTKYGRKLKG--SVLLKVPNGGSWRIEL--AHHGERTLLQKGWKEFADFYSIETRFFLVFKYLGNS 95 
                                         5689*********877444..6***************..*********************************987 PP

                                         EE..EEEEE- CS
                                  B3  89 efelvvkvfr 98 
                                         +   +v +f+
  cra_locus_8503_iso_2_len_727_ver_3  96 QL--RVLIFD 103
                                         77..888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.09712105IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-2112106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-2213105IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-1414103No hitNo description
SMARTSM010191.7E-1215105IPR003340B3 DNA binding domain
PfamPF023621.1E-1224103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
XAAKKPKGEE ESVHFYKVVM FPSDQGLKIP VAFMTKYGRK LKGSVLLKVP NGGSWRIELA  60
HHGERTLLQK GWKEFADFYS IETRFFLVFK YLGNSQLRVL IFDINGVEIE YPSHENSSSE  120
EESEIILSNE DEEISVEILQ SYPRNRASKR AKCVEEDDSV QILDDLAEGE PNGLPIKQNQ  180
TEELDCSRQK MKKSGKL