PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8503_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 325aa MW: 36998.4 Da PI: 9.5215

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8503_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.7	2.3e-14	25	103	14	98
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 + l +p f++++g k ++ + l+ ++g sW+++l +++r++l+kGWkeF++ ++++ f+vFk+ g+s cra_locus_8503_iso_3_len_988_ver_3 25 QGLKIPVAFMTKYGRKLKG--SVLLKVPNGGSWRIEL--AHHGERTLLQKGWKEFADFYSIETRFFLVFKYLGNS 95 5689*******877444..6***********..*******************************987 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 + +v +f+ cra_locus_8503_iso_3_len_988_ver_3 96 QL--RVLIFD 103 77..888876 PP
2	B3	55.2	1.3e-17	234	321	5	94
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 ps+v+ + +++p++f +++++ k ++ +l l s ++W v l +++r +++ GWkeFvk+n Lk+gD cra_locus_8503_iso_3_len_988_ver_3 234 VQPSSVSGKVGMYIPRNFEAQYMK-KMKGLELNLDVaGSKKTWPVIL-LMYSPKRALFGVGWKEFVKENALKVGD 306 56899999999*****999964.467889999985677***.67788889*************** PP EEEEEE-SS.SEE..EE CS B3 79 fvvFkldgr.sefelvv 94 ++vF+l++ ++f +v cra_locus_8503_iso_3_len_988_ver_3 307 VCVFELVKAaRKF--NV 321 ***99876666..44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.097	12	105	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.69E-20	12	106	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.8E-21	13	105	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.84E-13	14	103	No hit	No description
SMART	SM01019	1.7E-12	15	105	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-12	24	103	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.3E-20	222	324	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.63E-20	225	324	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.38E-20	228	324	No hit	No description
SMART	SM01019	1.8E-12	229	322	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.663	230	325	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.5E-16	233	321	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
XAAKKPKGEE ESVHFYKVVM FPSDQGLKIP VAFMTKYGRK LKGSVLLKVP NGGSWRIELA 60 HHGERTLLQK GWKEFADFYS IETRFFLVFK YLGNSQLRVL IFDINGVEIE YPSHENSSSE 120 EESEIILSNE DEEISVEILQ SYPRNRASKR AKCVEEDDSV QILDDLAEGE PNGLPIKQNQ 180 TEELDCSRQK MKKNGKSMGI SIGNNATEMV KEKSKSYKKA KAFRSSNPFF IYLVQPSSVS 240 GKVGMYIPRN FEAQYMKKMK GLELNLDVAG SKKTWPVILL MYSPKRALFG VGWKEFVKEN 300 ALKVGDVCVF ELVKAARKFN VIIYQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	2e-16	207	315	26	130	B3 domain-containing transcription factor VRN1
4i1k_B	2e-16	207	315	26	130	B3 domain-containing transcription factor VRN1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA759	18	93