PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8513_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 279aa MW: 31246.3 Da PI: 9.2502

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8513_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	46.1	1.6e-14	93	129	2	39
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpyl 39 p+YVN KQ+++Il+RRq+Rakle+++k+ +ksrk +l cra_locus_8513_iso_2_len_1900_ver_3 93 VPVYVNTKQFRAILRRRQMRAKLEAQNKI-AKSRKVFL 129 59***************************.99999765 PP
2	CBFB_NFYA	34.5	6.8e-11	155	175	38	58
CBFB_NFYA 38 ylheSRhkhAlrRpRgsgGrF 58 +lheSRh hAl+RpRgsgGrF cra_locus_8513_iso_2_len_1900_ver_3 155 ILHESRHIHALKRPRGSGGRF 175 79******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.0E-22	90	178	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	26.88	91	178	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.4E-23	94	175	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MGNTARNNSM VQNHGSKHEH QNKSSLPYWN ADYAFGQMQF DYNHNMTCVP YQWAESCFGA 60 LIAAYGPNAL VYPQMMGFNQ ARVPIPLDCA EDVPVYVNTK QFRAILRRRQ MRAKLEAQNK 120 IAKSRKVFLS FKLSAFGPAI FRLEFIHICS FCVAILHESR HIHALKRPRG SGGRFLNAKQ 180 SDKSKPSVPT HSEDMACQRL GGDLSSGTEV QHSNSCSWET STPSSSDVTS IFSGDDIFQQ 240 REIRLSRSSF NMDAHVGEDL PHLEAGNRLF STIKGGAPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-14	92	182	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027083064.1	2e-77	nuclear transcription factor Y subunit A-3-like isoform X2
TrEMBL	A0A068UY21	3e-76	A0A068UY21_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4800	20	27