PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8513_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 179aa MW: 19887.2 Da PI: 10.425

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8513_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	99.5	3.5e-31	20	75	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVN KQ+++Il+RRq+Rakle+++k+ +ksrkpylheSRh hAl+RpRgsgGrF cra_locus_8513_iso_5_len_2381_ver_3 20 VPVYVNTKQFRAILRRRQMRAKLEAQNKI-AKSRKPYLHESRHIHALKRPRGSGGRF 75 59*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.9E-35	17	78	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.585	18	78	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-22	21	43	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.5E-27	21	75	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-22	52	75	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MXAGKLQARV PIPLDCAEDV PVYVNTKQFR AILRRRQMRA KLEAQNKIAK SRKPYLHESR 60 HIHALKRPRG SGGRFLNAKQ SDKSKPSVPT HSEDMACQRL GGDLSSGTEV QHSNSCSWET 120 STPSSSDVTS IFSGDDIFQQ REIRLSRSSF NMDAHVGEDL PHLEAGNRLF STIKGGAPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-21	19	82	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027083064.1	8e-61	nuclear transcription factor Y subunit A-3-like isoform X2
Swissprot	Q9LNP6	2e-39	NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBL	A0A068UY21	2e-59	A0A068UY21_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400055982	2e-59	(Solanum tuberosum)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Djami-Tchatchou AT,Ntushelo K Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum. Pak. J. Biol. Sci., 2017. 20(3): p. 147-153 [PMID:29023006]