PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8513_iso_7

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 252aa MW: 28247.7 Da PI: 9.3739

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8513_iso_7	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	98.6	6.5e-31	93	148	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVN KQ+++Il+RRq+Rakle+++k+ +ksrkpylheSRh hAl+RpRgsgGrF cra_locus_8513_iso_7_len_1818_ver_3 93 VPVYVNTKQFRAILRRRQMRAKLEAQNKI-AKSRKPYLHESRHIHALKRPRGSGGRF 148 59*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.9E-35	90	151	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.585	91	151	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.2E-26	94	148	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.6E-22	94	116	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.6E-22	125	148	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MGNTARNNSM VQNHGSKHEH QNKSSLPYWN ADYAFGQMQF DYNHNMTCVP YQWAESCFGA 60 LIAAYGPNAL VYPQMMGFNQ ARVPIPLDCA EDVPVYVNTK QFRAILRRRQ MRAKLEAQNK 120 IAKSRKPYLH ESRHIHALKR PRGSGGRFLN AKQSDKSKPS VPTHSEDMAC QRLGGDLSSG 180 TEVQHSNSCS WETSTPSSSD VTSIFSGDDI FQQREIRLSR SSFNMDAHVG EDLPHLEAGN 240 RLFSTIKGGA PK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-20	92	155	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027083064.1	1e-85	nuclear transcription factor Y subunit A-3-like isoform X2
Swissprot	Q9LNP6	1e-43	NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBL	A0A068UY21	3e-84	A0A068UY21_COFCA; Uncharacterized protein
STRING	XP_009608945.1	6e-77	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Djami-Tchatchou AT,Ntushelo K Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum. Pak. J. Biol. Sci., 2017. 20(3): p. 147-153 [PMID:29023006]