PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8528_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 468aa MW: 51123.9 Da PI: 6.383

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8528_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	6e-16	57	101	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g ++t+ q++s+ qk+ cra_locus_8528_iso_2_len_1932_ver_3 57 REKWTQEEHQRFLEALKLYGRA-WRQIEEHVG-TKTAIQIRSHAQKF 101 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.94E-15	51	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.106	52	106	IPR017930	Myb domain
TIGRFAMs	TIGR01557	5.1E-16	55	104	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.7E-9	56	97	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-12	56	104	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-13	57	100	IPR001005	SANT/Myb domain
CDD	cd00167	1.89E-9	59	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MVAEAPVFDQ VEGSACEAPF GAGVHLESAA TQSQSLGAFG NGYTPKVRKP YTITKQREKW 60 TQEEHQRFLE ALKLYGRAWR QIEEHVGTKT AIQIRSHAQK FFAQVARDSK PDSEGSLNPM 120 EIPPPRPKKK PLHPYPRKVV NSQKYGAIDP NSHEQSPPNV TGLDRETRSP TSVFSAIGSD 180 ASGSPFSEPQ RSSRLSPTSC TSDNAHSANM LLRENDNECM TSDSSVEEER GFFQSTQLSA 240 PTYMDAKLVM EPDLLTIAGA YSLDNSASDE PSTTIKLFGK TVVLNESQKL SPSATESETT 300 TNDEELVVTD GQHFQNSATT DADPKFAFPF VPGSITPLPW FVPQYALSDE CSHAGLTPGS 360 IPWWALYQGV IFPPVSFGNQ TADSPYKGEQ QHELRDGSLT SSNSGSTGEV NSLQKKTVAV 420 ERKGKAKLLK HGSSRGFVPY KRCLAERDAT SVIVAAEEHK GPKNRVCL

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MVAEAPVFDQ VEGSACEAPF GAGVHLESAA TQSQSLGAFG NGYTPKVRKP YTITKQREKW  60
TQEEHQRFLE ALKLYGRAWR QIEEHVGTKT AIQIRSHAQK FFAQVARDSK PDSEGSLNPM  120
EIPPPRPKKK PLHPYPRKVV NSQKYGAIDP NSHEQSPPNV TGLDRETRSP TSVFSAIGSD  180
ASGSPFSEPQ RSSRLSPTSC TSDNAHSANM LLRENDNECM TSDSSVEEER GFFQSTQLSA  240
PTYMDAKLVM EPDLLTIAGA YSLDNSASDE PSTTIKLFGK TVVLNESQKL SPSATESETT  300
TNDEELVVTD GQHFQNSATT DADPKFAFPF VPGSITPLPW FVPQYALSDE CSHAGLTPGS  360
IPWWALYQGV IFPPVSFGNQ TADSPYKGEQ QHELRDGSLT SSNSGSTGEV NSLQKKTVAV  420
ERKGKAKLLK HGSSRGFVPY KRCLAERDAT SVIVAAEEHK GPKNRVCL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027168852.1	1e-162	protein REVEILLE 7-like isoform X1
TrEMBL	A0A068TRG4	1e-152	A0A068TRG4_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7447	21	27