PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8584_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family LBD
Protein Properties Length: 113aa    MW: 12505.2 Da    PI: 4.4132
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8584_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26035.23.6e-111376197
                              DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelall 97
                                        +vyeA ar+rdPvyG+vg+i +lq+++ +l++el+++
  cra_locus_8584_iso_1_len_583_ver_3  1 MVYEATARLRDPVYGCVGLIASLQKHVFRLQSELNAA 37
                                        69*******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.155141IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-9136IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MVYEATARLR DPVYGCVGLI ASLQKHVFRL QSELNAALAE TMALRTQLSD ALTIRLTTSP  60
PPRAFSVGSE NNFSGLIDHQ LVNEFNNCFT NNPFDAMLEE SCQASEIVPE IPF