PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8584_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family LBD
Protein Properties Length: 181aa    MW: 20193.1 Da    PI: 5.2519
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8584_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.47.5e-419105197
                              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyG 75 
                                         +CaaCk+lrr+C ++C++ pyfp ++p+kfa+vh++FGasn++kll+++p e+r+da++s+vyeA ar+rdPvyG
  cra_locus_8584_iso_2_len_802_ver_3   9 PCAACKILRRRCDENCIFLPYFPPTEPHKFAAVHRIFGASNITKLLQEIPVEDRDDAVTSMVYEATARLRDPVYG 83 
                                         7************************************************************************** PP

                              DUF260  76 avgvilklqqqleqlkaelall 97 
                                         +vg+i +lq+++ +l++el+++
  cra_locus_8584_iso_2_len_802_ver_3  84 CVGLIASLQKHVFRLQSELNAA 105
                                         ******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.688109IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-419104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MASSRNLMPC AACKILRRRC DENCIFLPYF PPTEPHKFAA VHRIFGASNI TKLLQEIPVE  60
DRDDAVTSMV YEATARLRDP VYGCVGLIAS LQKHVFRLQS ELNAALAETM ALRTQLSDAL  120
TIRLTTSPPP RAFSVGSENN FSGLIDHQLV NEFNNCFTNN PFDAMLEESC QASEIVPEIP  180
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-45911011112LOB family transfactor Ramosa2.1
5ly0_B7e-45911011112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242472.21e-64LOB domain-containing protein 24-like isoform X2
SwissprotQ8LBW32e-46LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A3Q7H1C12e-61A0A3Q7H1C1_SOLLC; Uncharacterized protein
STRINGSolyc06g082770.2.14e-62(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131471419
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]