PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_86286_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 210aa    MW: 23221.4 Da    PI: 7.6073
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_86286_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-20106157155
                                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          ++y+GVr+++ +gr++AeIrdp+++g   r++lg++ t+e+Aa a+++a+ +++g
  cra_locus_86286_iso_2_len_762_ver_3 106 TRYRGVRRRP-WGRFAAEIRDPNKRG--SRIWLGTYETPEDAALAYDRAAFQIRG 157
                                          68********.**********96655..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-14106157IPR001471AP2/ERF domain
CDDcd000186.75E-29106167No hitNo description
SuperFamilySSF541714.25E-23107166IPR016177DNA-binding domain
SMARTSM003806.3E-37107171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-32107166IPR001471AP2/ERF domain
PROSITE profilePS5103224.553107165IPR001471AP2/ERF domain
PRINTSPR003676.7E-13108119IPR001471AP2/ERF domain
PRINTSPR003676.7E-13147167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
XNDNTFLPTE VNGDHLEFLA TLTEEAGNIS PQLISVELSS EESSRISSPG DNIFISTEAN  60
RGDLGFNYVD NNSPTSTESQ EEDMAGKKKK AGAAARGKNA PTDQWTRYRG VRRRPWGRFA  120
AEIRDPNKRG SRIWLGTYET PEDAALAYDR AAFQIRGAKA LLNFPHLLNC VAQPARVGQR  180
RRAMESSSSS ESETESHGGA RKKMKQETIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-29108169667ATERF1
3gcc_A2e-29108169667ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179204RRRAMESSSSSESETESHGGARKKMK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027157710.16e-43ethylene-responsive transcription factor 13-like
SwissprotQ8L9K15e-42ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A192XLN71e-117A0A192XLN7_CATRO; ORCA3-like protein 2
STRINGXP_009787891.13e-42(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]