PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_86538_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 122aa    MW: 13595.3 Da    PI: 6.7918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_86538_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.6e-05426123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         ++C++Cg  F++   L  H+r+H
  cra_locus_86538_iso_1_len_363_ver_3  4 HECSYCGAEFTSGQALGGHMRRH 26
                                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.4E-5228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.61E-6229No hitNo description
PfamPF139122.4E-13328IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.367431IPR007087Zinc finger, C2H2
SMARTSM003550.0098426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
XKVHECSYCG AEFTSGQALG GHMRRHRGGV NIITSNNNAT NTNLSLSPIS PASIDQEIID  60
HEIEAKKSRK SSYGLSLDLN LPPTDDHHQR ENVFTFASSK QQQPEEQAQK QQKGNNQEQE  120
KX
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196059.15e-24C2H2-type zinc finger family protein
RefseqXP_027115655.17e-24zinc finger protein ZAT5-like
SwissprotQ681X46e-15ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A178UR519e-23A0A178UR51_ARATH; Uncharacterized protein
STRINGAT5G04390.12e-23(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]