PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_86624_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YC

Protein Properties

Length: 138aa MW: 15787 Da PI: 9.9355

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_86624_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	52.2	1.4e-16	11	100	9	97
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 +++ a++ ++ e+P rikki+k d++++++s+ea l+s + elfi l+ +s a e+k++t+k + a cra_locus_86624_iso_1_len_438_ver_3 11 EVQIAEETHQPEIPTGRIKKIMKIDKEINRVSSEALYLISCSTELFIQFLAEKSARVALEKKKKTIKLEHLRVA 84 455667778999************************************************************** PP NF-YC 83 vtrtd.ifdflvdivp 97 v+r + + dfl+d p cra_locus_86624_iso_1_len_438_ver_3 85 VKRHQpTSDFLLDSLP 100 9976489****987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.3E-20	18	86	IPR009072	Histone-fold
SuperFamily	SSF47113	4.94E-18	22	100	IPR009072	Histone-fold
Pfam	PF00808	5.1E-19	22	85	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
XLNLAMAENE EVQIAEETHQ PEIPTGRIKK IMKIDKEINR VSSEALYLIS CSTELFIQFL 60 AEKSARVALE KKKKTIKLEH LRVAVKRHQP TSDFLLDSLP VPSQPSDQHP KDRLRLRPEN 120 KPAPAGTRRI DAFFNKCT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027154518.1	2e-65	dr1-associated corepressor
TrEMBL	A0A068V0C8	2e-64	A0A068V0C8_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400074841	2e-58	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11435	24	25