PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8669_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 87aa MW: 9521.64 Da PI: 8.3602

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8669_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.001	25	47	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ + s+ +L++H + H cra_locus_8669_iso_2_len_493_ver_3 25 QCPQCNLRLSSVTDLVNHVEKvH 47 7*****************99988 PP
2	zf-C2H2	19.5	2.7e-06	59	81	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ L+ H + H cra_locus_8669_iso_2_len_493_ver_3 59 VCPKCSKGFRDPVALVEHVEKeH 81 7*****************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.28	24	47	IPR015880	Zinc finger, C2H2-like
Pfam	PF13894	9.8E-4	25	47	No hit	No description
SuperFamily	SSF57667	7.79E-5	25	77	No hit	No description
PROSITE pattern	PS00028	0	26	47	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.4	58	81	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.078	58	86	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	60	81	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
FSQASVRGSS SNNGHSGDRT GFVEQCPQCN LRLSSVTDLV NHVEKVHERN GIMKSTIDVC 60 PKCSKGFRDP VALVEHVEKE HRGTSKA

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016543719.1	3e-35	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
Swissprot	Q8VZ42	8e-24	SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBL	M1C6L9	1e-36	M1C6L9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400060887	2e-34	(Solanum tuberosum)