PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8670_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 204aa MW: 23223 Da PI: 9.701

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8670_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	33.5	8.2e-11	176	197	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk++++pr cra_locus_8670_iso_1_len_1061_ver_3 176 LDDGYKWRKYGQKVVKNTQHPR 197 59*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-12	161	198	IPR003657	WRKY domain
SuperFamily	SSF118290	1.26E-9	169	198	IPR003657	WRKY domain
PROSITE profile	PS50811	12.84	171	197	IPR003657	WRKY domain
SMART	SM00774	0.002	176	204	IPR003657	WRKY domain
Pfam	PF03106	1.5E-7	177	198	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1901141	Biological Process	regulation of lignin biosynthetic process
GO:1904369	Biological Process	positive regulation of sclerenchyma cell differentiation
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MASQGILNQS LFEDHQDHHM SSSIQMGFFS SNFPQNYSNN IPYGCSNINQ PILRTIPSSS 60 SDEQQQPLPY NTNNNNTLSQ SSSSTLIKLQ KDIDFTSNFG GGPYQHQILS LQRSSPNLWS 120 WGEVNYDCMS SKRNTNGGEN ISHLGISAIK MKKIKARRKV REPRFCFKTL SDVDVLDDGY 180 KWRKYGQKVV KNTQHPRYVV NLPL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074070.1	5e-59	probable WRKY transcription factor 57
Refseq	XP_027077802.1	5e-59	probable WRKY transcription factor 57
Refseq	XP_027179733.1	5e-59	probable WRKY transcription factor 57
TrEMBL	A0A1R3GCQ7	4e-56	A0A1R3GCQ7_COCAP; DNA-binding WRKY
TrEMBL	A0A1R3IMD1	1e-56	A0A1R3IMD1_9ROSI; DNA-binding WRKY
STRING	EOX92322	3e-53	(Theobroma cacao)