PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8670_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 253aa MW: 29113.3 Da PI: 9.0936

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8670_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.4	2.5e-32	176	234	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ cra_locus_8670_iso_2_len_1247_ver_3 176 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHS 234 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-33	161	234	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-28	169	235	IPR003657	WRKY domain
PROSITE profile	PS50811	29.471	171	236	IPR003657	WRKY domain
SMART	SM00774	6.1E-37	176	235	IPR003657	WRKY domain
Pfam	PF03106	3.5E-25	177	233	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1901141	Biological Process	regulation of lignin biosynthetic process
GO:1904369	Biological Process	positive regulation of sclerenchyma cell differentiation
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MASQGILNQS LFEDHQDHHM SSSIQMGFFS SNFPQNYSNN IPYGCSNINQ PILRTIPSSS 60 SDEQQQPLPY NTNNNNTLSQ SSSSTLIKLQ KDIDFTSNFG GGPYQHQILS LQRSSPNLWS 120 WGEVNYDCMS SKRNTNGGEN ISHLGISAIK MKKIKARRKV REPRFCFKTL SDVDVLDDGY 180 KWRKYGQKVV KNTQHPRSYY RCTQDNCRVK KRVERLAEDP RMVITTYEGR HIHSPSHDEE 240 DSQASSQVNS YFW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-25	168	233	9	74	Probable WRKY transcription factor 4
2lex_A	2e-25	168	233	9	74	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074070.1	1e-102	probable WRKY transcription factor 57
Refseq	XP_027077802.1	1e-102	probable WRKY transcription factor 57
Refseq	XP_027179733.1	1e-102	probable WRKY transcription factor 57
TrEMBL	A0A068UYZ8	4e-99	A0A068UYZ8_COFCA; Uncharacterized protein
STRING	EOX92322	3e-96	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10376	21	26