PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8686_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 187aa    MW: 20534.3 Da    PI: 11.4447
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8686_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.87.1e-19102136135
                                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                          C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  cra_locus_8686_iso_1_len_1924_ver_3 102 CLHCGADKTPQWRAGPMGPKTLCNACGVRYKSGRL 136
                                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.29596132IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-1796146IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-1698159No hitNo description
Gene3DG3DSA:3.30.50.105.7E-1599134IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.92E-12101148No hitNo description
PROSITE patternPS003440102127IPR000679Zinc finger, GATA-type
PfamPF003201.4E-16102136IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGLDHQSPVS VLENSTSSSN CSGGNGNAIM SCCRSLQVPT SFPVRARSKR RRTRRIGGFG  60
DLPSQHLLWS NNVKKMLQQE LALPPLPTTR TNRNASSIGR RCLHCGADKT PQWRAGPMGP  120
KTLCNACGVR YKSGRLVPEY RPASSPTFCA ALHSNSHRKI VEMRRQKQPG IGGIMANESI  180
GYRLGXW
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027164141.13e-80GATA transcription factor 1-like
RefseqXP_027164142.13e-80GATA transcription factor 1-like
SwissprotQ8LAU91e-41GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A068TT173e-78A0A068TT17_COFCA; Uncharacterized protein
STRINGXP_009767386.15e-69(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445