PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_86978_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 334aa MW: 36171.5 Da PI: 9.6944

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_86978_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	89.3	5.1e-28	162	217	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +++VNaKQy++I++RRq Rak++ +kl ++rkpylh SRh hA+rRpRg+gGrF cra_locus_86978_iso_2_len_1822_ver_3 162 GTIFVNAKQYNGIIRRRQYRAKAALANKL-LRNRKPYLHLSRHLHAMRRPRGCGGRF 217 579************************.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.2E-32	159	220	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	32.94	160	220	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.7E-19	163	185	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.3E-25	163	217	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.7E-19	194	217	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MAKHALTVFS EDQEGIVGQT PASAFFTVPW LSGLGSQGAA YDERSVQLKS PASENPAGGN 60 QFTATKQAES NLGLGKGNSA QFTIFPGDCK PSGNVQIFQL QNASSVQAAT AEHQKYFELG 120 LSQPLICTKY PYGDQFYGVI SAYGPQLAGR IMLPLNSVTD EGTIFVNAKQ YNGIIRRRQY 180 RAKAALANKL LRNRKPYLHL SRHLHAMRRP RGCGGRFLNT KNSDGSKGNT DDKKTGEGQF 240 FQLTGSQNSE VLQSDSGNSN STRELLGNRS NTFGSEVTSI CYRGGDLDSF KINHLYHKFQ 300 SIPNTMNAGR GIVLPSQWVA AAISAGDGCC NLKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-14	161	224	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027173693.1	1e-128	nuclear transcription factor Y subunit A-2
Swissprot	Q9M9X4	3e-58	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A2R6QVS9	1e-115	A0A2R6QVS9_ACTCH; Nuclear transcription factor Y subunit A-10 like
STRING	EOY08507	1e-114	(Theobroma cacao)

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]