PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_86978_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 365aa MW: 39515 Da PI: 9.4169

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_86978_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	89.1	5.9e-28	193	248	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +++VNaKQy++I++RRq Rak++ +kl ++rkpylh SRh hA+rRpRg+gGrF cra_locus_86978_iso_4_len_1612_ver_3 193 GTIFVNAKQYNGIIRRRQYRAKAALANKL-LRNRKPYLHLSRHLHAMRRPRGCGGRF 248 579************************.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.2E-32	190	251	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	32.94	191	251	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.4E-19	194	216	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.3E-25	194	248	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.4E-19	225	248	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
XAKHALTVFS EDQEGIVGQT PASAFFTVPW LSGLGSQGAA YDERSVQLKS PASENPAGGN 60 QFTATKQAES NLGLGKGNSA QFTIFPGDCK PSGNVQIFQL QNASSVQAAT AEHQKYFELG 120 LSQPLVNLII IQVLPLHVIN DAAXSYTLHS LLCVGLDLTK YPYGDQFYGV ISAYGPQLAG 180 RIMLPLNSVT DEGTIFVNAK QYNGIIRRRQ YRAKAALANK LLRNRKPYLH LSRHLHAMRR 240 PRGCGGRFLN TKNSDGSKGN TDDKKTGEGQ FFQLTGSQNS EVLQSDSGNS NSTRELLGNR 300 SNTFGSEVTS ICYRGGDLDS FKINHLYHKF QSIPNTMNAG RGIVLPSQWV AAAISAGDGC 360 CNLKV

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

XAKHALTVFS EDQEGIVGQT PASAFFTVPW LSGLGSQGAA YDERSVQLKS PASENPAGGN  60
QFTATKQAES NLGLGKGNSA QFTIFPGDCK PSGNVQIFQL QNASSVQAAT AEHQKYFELG  120
LSQPLVNLII IQVLPLHVIN DAAXSYTLHS LLCVGLDLTK YPYGDQFYGV ISAYGPQLAG  180
RIMLPLNSVT DEGTIFVNAK QYNGIIRRRQ YRAKAALANK LLRNRKPYLH LSRHLHAMRR  240
PRGCGGRFLN TKNSDGSKGN TDDKKTGEGQ FFQLTGSQNS EVLQSDSGNS NSTRELLGNR  300
SNTFGSEVTS ICYRGGDLDS FKINHLYHKF QSIPNTMNAG RGIVLPSQWV AAAISAGDGC  360
CNLKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-15	192	255	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027173693.1	1e-120	nuclear transcription factor Y subunit A-2
Swissprot	Q9M9X4	9e-53	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A2R6QVS9	1e-106	A0A2R6QVS9_ACTCH; Nuclear transcription factor Y subunit A-10 like
STRING	EOY08507	1e-106	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3706	23	47

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]