PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_86978_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 183aa MW: 20191.7 Da PI: 10.5768

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_86978_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	90.8	1.8e-28	11	66	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +++VNaKQy++I++RRq Rak++ +kl ++rkpylh SRh hA+rRpRg+gGrF cra_locus_86978_iso_5_len_1160_ver_3 11 GTIFVNAKQYNGIIRRRQYRAKAALANKL-LRNRKPYLHLSRHLHAMRRPRGCGGRF 66 579************************.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.2E-32	8	69	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	32.94	9	69	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.6E-25	12	66	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.8E-19	12	34	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.8E-19	43	66	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MLPLNSVTDE GTIFVNAKQY NGIIRRRQYR AKAALANKLL RNRKPYLHLS RHLHAMRRPR 60 GCGGRFLNTK NSDGSKGNTD DKKTGEGQFF QLTGSQNSEV LQSDSGNSNS TRELLGNRSN 120 TFGSEVTSIC YRGGDLDSFK INHLYHKFQS IPNTMNAGRG IVLPSQWVAA AISAGDGCCN 180 LKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-16	10	73	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027173693.1	1e-81	nuclear transcription factor Y subunit A-2
Swissprot	Q9M9X4	5e-43	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	V4T1B6	7e-70	V4T1B6_9ROSI; Uncharacterized protein
STRING	XP_006430046.1	1e-70	(Citrus clementina)

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]