PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_87588_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

YABBY

Protein Properties

Length: 170aa MW: 19304.8 Da PI: 9.7896

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_87588_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	138.6	7e-43	29	124	83	170
YABBY 83 ksnvekeesastsvssekl.........senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdi 147 k ++ + s+s+ +s +k+ ++d+ pr+ p irPPekrqrvPsaynrfikeeiqrikasnP+i cra_locus_87588_iso_1_len_507_ver_3 29 KDQEYTCGSSSSARSCNKFtasfdfsadHLHNDQPPPRITP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEI 101 11111111222222222223344444333455566677777.9***************************** PP YABBY 148 shreafsaaaknWahfPkihfgl 170 shreafs+aaknWahfP+ihfgl cra_locus_87588_iso_1_len_507_ver_3 102 SHREAFSTAAKNWAHFPHIHFGL 124 *******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-40	9	124	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-8	64	117	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.1E-5	72	118	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
XLQHHLQQKM QKQDESNKRE EDGGGSSSKD QEYTCGSSSS ARSCNKFTAS FDFSADHLHN 60 DQPPPRITPI RPPEKRQRVP SAYNRFIKEE IQRIKASNPE ISHREAFSTA AKNWAHFPHI 120 HFGLKLDQAN KQPKLDHPVP PTPPPVPVSV REHAAGPQKS RPSFYEIXIX

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027164904.1	1e-46	putative axial regulator YABBY 2 isoform X3
Swissprot	Q9XFB0	6e-41	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A068V4S5	1e-43	A0A068V4S5_COFCA; Uncharacterized protein
STRING	XP_006487832.1	5e-44	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]