PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_88291_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 84aa MW: 9427.49 Da PI: 8.8581

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_88291_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	64	83	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 y+C+ C++ F++ L H+ cra_locus_88291_iso_1_len_360_ver_3 64 YSCSFCTREFRSAQALGGHM 83 99***********9998888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.621	64	84	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MQQRSQYLMW LKSKQILKSQ YYLGASNMKI KSCSREDIEE ATAAFGEDVV SGGGLGFAWP 60 PRSYSCSFCT REFRSAQALG GHMX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027155325.1	2e-20	probable transcriptional regulator RABBIT EARS
TrEMBL	A0A151R8G6	4e-17	A0A151R8G6_CAJCA; Putative transcriptional regulator RABBIT EARS
STRING	POPTR_0010s20740.1	6e-17	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2110	24	53