PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8845_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 833aa    MW: 92021.4 Da    PI: 6.6149
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8845_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18227327199
                                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHH CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvk 70 
                                          f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     +
  cra_locus_8845_iso_5_len_3000_ver_3 227 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQ 299
                                          99**************************555567778***************9989999999***9.******* PP

                                          HHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                   B3  71 angLkegDfvvFkldgrsefelvvkvfrk 99 
                                          + +L++gD+v+F++++  e++l+++++++
  cra_locus_8845_iso_5_len_3000_ver_3 300 SMQLQAGDTVTFSRMD-PEGKLLMGFRKA 327
                                          *************876.888888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-29219327IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-19224326IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-22225326No hitNo description
PfamPF023626.0E-16227327IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152227328IPR003340B3 DNA binding domain
SMARTSM010191.9E-20227328IPR003340B3 DNA binding domain
PROSITE profilePS5105013.508489546IPR011124Zinc finger, CW-type
PfamPF074961.2E-9494525IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MQTSSREKCK DSGVSAANGV DEKRFSNVGN QSSISLINKM KFAECCDDAG SDDHTLLPPS  60
QMDDAIETIN QMKAEETFHP AGEFGSSFLS FSGQSSIQST QKVKPSQYME NVHGSPVRTN  120
LTISLSATSG NTDALPTAGV EERQLGRKIS SFQQGSKSRH LLPKPPKSIL AAGLETNAST  180
TSQIRVARPP VEGRIKNQLL PRYWPRITDQ ELQQISGDSN STVVPLFEKV LSASDAGRIG  240
RLVLPKACAE AYFPPISQPE GLPLRIQDVK GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS  300
MQLQAGDTVT FSRMDPEGKL LMGFRKASNA LMVQDKHLPS MPNGAFSSEP FFLPVNENLH  360
AVNSHSGFLQ SFKGRDFPLS ALSKHFNGGD FGWPLSESNV GKTVDGPMSP STLVPERKRS  420
RNIGSKNKRL LIDSQDALEV KLSWEELQDM LRPPSGIEPS TVTIEDFELE EYEQAPVLGK  480
KSIFTVLQSG EQEQWVQCDS CLKWRRLPAD VLLPPKWTCQ DNTWNLNRFL XIPSTISCTS  540
SPKLSALVNE HLYFAQGFMF LPDELSPQEL ENLLQMSKEL EKKRLGAGLR SGNVHESSNP  600
DALGNSTAIG GNISEVGGTS VATTTKHPRH RPGCSCIVCI QPPSGKGKHK PTCTCNVCMT  660
VKRRFKTLMM RKKKRQSERE AEIAQRNQFV WERKEEGEAE SIGMQLATPI DSLEDQRRLG  720
SELQIISQNN TQSVEIGNNG KLDLNSHPDR ENLQMKSSRI SMVSLLQEAS LPLETYLKQN  780
GLTSLVSDQQ ASSGSHVLQP ANRDSENLSH GVQEPEDGSE ELSETDQSGK DPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-692053302127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1661672KRRFKTLMMRKK
2661674KRRFKTLMMRKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069391.10.0B3 domain-containing transcription repressor VAL2-like isoform X4
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A068UCW00.0A0A068UCW0_COFCA; Uncharacterized protein
STRINGXP_009768196.10.0(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]