PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8845_iso_9

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 805aa MW: 88804.9 Da PI: 6.5694

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8845_iso_9	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.1	1.6e-18	227	327	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvk 70 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G + cra_locus_8845_iso_9_len_2915_ver_3 227 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQ 299 99************************555567778***********99899999999.**** PP HHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 71 angLkegDfvvFkldgrsefelvvkvfrk 99 + +L++gD+v+F++++ e++l+++++++ cra_locus_8845_iso_9_len_2915_ver_3 300 SMQLQAGDTVTFSRMD-PEGKLLMGFRKA 327 ***********876.888888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-29	219	327	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-19	224	326	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.49E-22	225	326	No hit	No description
Pfam	PF02362	5.7E-16	227	327	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.152	227	328	IPR003340	B3 DNA binding domain
SMART	SM01019	1.9E-20	227	328	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.601	489	539	IPR011124	Zinc finger, CW-type
Pfam	PF07496	3.0E-13	494	536	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence Send to blast
MQTSSREKCK DSGVSAANGV DEKRFSNVGN QSSISLINKM KFAECCDDAG SDDHTLLPPS 60 QMDDAIETIN QMKAEETFHP AGEFGSSFLS FSGQSSIQST QKVKPSQYME NVHGSPVRTN 120 LTISLSATSG NTDALPTAGV EERQLGRKIS SFQQGSKSRH LLPKPPKSIL AAGLETNAST 180 TSQIRVARPP VEGRIKNQLL PRYWPRITDQ ELQQISGDSN STVVPLFEKV LSASDAGRIG 240 RLVLPKACAE AYFPPISQPE GLPLRIQDVK GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS 300 MQLQAGDTVT FSRMDPEGKL LMGFRKASNA LMVQDKHLPS MPNGAFSSEP FFLPVNENLH 360 AVNSHSGFLQ SFKGRDFPLS ALSKHFNGGD FGWPLSESNV GKTVDGPMSP STLVPERKRS 420 RNIGSKNKRL LIDSQDALEV KLSWEELQDM LRPPSGIEPS TVTIEDFELE EYEQAPVLGK 480 KSIFTVLQSG EQEQWVQCDS CLKWRRLPAD VLLPPKWTCQ DNTWNLNRAS CSVPDELSPQ 540 ELENLLQMSK ELEKKRLGAG LRSGNVHESS NPDALGNSTA IGGNISEVGG TSVATTTKHP 600 RHRPGCSCIV CIQPPSGKGK HKPTCTCNVC MTVKRRFKTL MMRKKKRQSE REAEIAQRNQ 660 FVWERKEEGE AESIGMQLAT PIDSLEDQRR LGSELQIISQ NNTQSVEIGN NGKLDLNSHP 720 DRENLQMKSS RISMVSLLQE ASLPLETYLK QNGLTSLVSD QQASSGSHVL QPANRDSENL 780 SHGVQEPEDG SEELSETDQS GKDPS

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence Send to blast

MQTSSREKCK DSGVSAANGV DEKRFSNVGN QSSISLINKM KFAECCDDAG SDDHTLLPPS  60
QMDDAIETIN QMKAEETFHP AGEFGSSFLS FSGQSSIQST QKVKPSQYME NVHGSPVRTN  120
LTISLSATSG NTDALPTAGV EERQLGRKIS SFQQGSKSRH LLPKPPKSIL AAGLETNAST  180
TSQIRVARPP VEGRIKNQLL PRYWPRITDQ ELQQISGDSN STVVPLFEKV LSASDAGRIG  240
RLVLPKACAE AYFPPISQPE GLPLRIQDVK GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS  300
MQLQAGDTVT FSRMDPEGKL LMGFRKASNA LMVQDKHLPS MPNGAFSSEP FFLPVNENLH  360
AVNSHSGFLQ SFKGRDFPLS ALSKHFNGGD FGWPLSESNV GKTVDGPMSP STLVPERKRS  420
RNIGSKNKRL LIDSQDALEV KLSWEELQDM LRPPSGIEPS TVTIEDFELE EYEQAPVLGK  480
KSIFTVLQSG EQEQWVQCDS CLKWRRLPAD VLLPPKWTCQ DNTWNLNRAS CSVPDELSPQ  540
ELENLLQMSK ELEKKRLGAG LRSGNVHESS NPDALGNSTA IGGNISEVGG TSVATTTKHP  600
RHRPGCSCIV CIQPPSGKGK HKPTCTCNVC MTVKRRFKTL MMRKKKRQSE REAEIAQRNQ  660
FVWERKEEGE AESIGMQLAT PIDSLEDQRR LGSELQIISQ NNTQSVEIGN NGKLDLNSHP  720
DRENLQMKSS RISMVSLLQE ASLPLETYLK QNGLTSLVSD QQASSGSHVL QPANRDSENL  780
SHGVQEPEDG SEELSETDQS GKDPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	8e-70	205	330	2	127	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	633	644	KRRFKTLMMRKK
2	633	646	KRRFKTLMMRKKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027069391.1	0.0	B3 domain-containing transcription repressor VAL2-like isoform X4
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A068UCW0	0.0	A0A068UCW0_COFCA; Uncharacterized protein
STRING	XP_009768196.1	0.0	(Nicotiana sylvestris)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]