PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_88501_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 231aa MW: 25410.9 Da PI: 6.5067

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_88501_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.2	1.6e-30	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69 +C++C+vlr++C++dC l+p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ cra_locus_88501_iso_1_len_733_ver_3 4 SCNGCRVLRKGCSEDCSLRPCLqwiktPESQANATVFLAKFYGRAGLVNLINAGPENLRPEIFRSLIYEACGRI 77 6*********************************************************************** PP DUF260 70 rdPvyGavgvilklqqqleqlkaelallkee 100 +P+yG+vg+++++++q q+++e++l++++ cra_locus_88501_iso_1_len_733_ver_3 78 INPIYGSVGLLWSGNWQRVQEAVEAVLAGSP 108 *********************99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.936	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-24	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEDCS LRPCLQWIKT PESQANATVF LAKFYGRAGL VNLINAGPEN 60 LRPEIFRSLI YEACGRIINP IYGSVGLLWS GNWQRVQEAV EAVLAGSPIM QLVSCDDSAA 120 EGHPIMPMKG SDIRHLTTTS SAAAFNHPHR VKTPRKNRFK RTSSGSTAAV HGNENEPPAK 180 FSITGWEDKE EKEVVEDEEM KRAPSHDSFS VETVELALAQ DEPAGLMVVP E

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027097963.1	1e-109	LOB domain-containing protein 40-like
Swissprot	Q9M886	7e-73	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A068TWE6	1e-107	A0A068TWE6_COFCA; Uncharacterized protein
STRING	XP_009586694.1	1e-95	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94