PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8867_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family E2F/DP
Protein Properties Length: 332aa    MW: 36042.2 Da    PI: 7.708
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8867_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP56.45e-18103185271
                              E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnl 58 
                                          ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+k+      D+lNVL+a+++
  cra_locus_8867_iso_1_len_1357_ver_3 103 TGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnngvstpdqqqyDEKKYTSTSDDALNVLMAMDI 173
                                          689********...*****999**************************999887777777788*********** PP

                              E2F_TDP  59 iekkekneirwkg 71 
                                          i+k +k+ei+wkg
  cra_locus_8867_iso_1_len_1357_ver_3 174 ISK-DKKEIQWKG 185
                                          ***.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.6E-1184313IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.3E-3798190IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.0E-20102185IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.4E-16105185IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.35E-13105186IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144587.86E-44190293IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440749.68E-43191320No hitNo description
SMARTSM011386.2E-68192330IPR014889Transcription factor DP, C-terminal
PfamPF087816.9E-41193298IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVKNKEDGLK NPSTTSRGGN GGGGGAGATR SWGTTVSGQS VSTSGSVGSP SSRSEAAIAT  60
PASESTFMRL NNLDIQGDDA GSQGAAGNRK KKRGQRAVGG DKTGRGLRQF SMKVCEKVES  120
KGRTTYNEVA DELVAEFADP NNGVSTPDQQ QYDEKKYTST SDDALNVLMA MDIISKDKKE  180
IQWKGLPRTS LNDIEELKNE RLGLRNRIEK KAAYLEELEE QYVGLQNLIQ RNEQLYGSGN  240
APSGGVALPF ILVQTRPHAT VEVEISEDMQ LVHFDFNSTP FELHDDNYVL KAMKFSEKPQ  300
APPAPSRSNI PVRPPTSPPL PGILKARVKH EH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3296190193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075421.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-164DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2G9FZK60.0A0A2G9FZK6_9LAMI; E2F-like protein
STRINGXP_010241817.10.0(Nelumbo nucifera)