PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8867_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family E2F/DP
Protein Properties Length: 216aa    MW: 24399.8 Da    PI: 7.095
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8867_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP50.73e-1612443871
                              E2F_TDP 38 dvknkrRRiYDilNVLealnliekkekneirwkg 71
                                           kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  cra_locus_8867_iso_2_len_1100_ver_3 12 MRKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 44
                                         5689********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013726.0E-5144IPR003316E2F/DP family, winged-helix DNA-binding domain
PIRSFPIRSF0094042.1E-852216IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.7E-20549IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.12E-11845IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.4E-13944IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.31E-4349152IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.59E-4350161No hitNo description
SMARTSM011383.3E-7551214IPR014889Transcription factor DP, C-terminal
PfamPF087811.1E-4252184IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVSQLQTSNN MMRKNIRRRV YDALNVLMAM DIISKDKKEI QWKGLPRTSL NDIEELKNER  60
LGLRNRIEKK AAYLEELEEQ YVGLQNLIQR NEQLYGSGNA PSGGVALPFI LVQTRPHATV  120
EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMKFSEKPES ESGAQKVPTD GGESSSMPNV  180
FQPQAPPAPS RSNIPVRPPT SPPLPGILKA RVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B8e-151493893PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068074.11e-128transcription factor-like protein DPB isoform X2
RefseqXP_027123244.11e-128transcription factor-like protein DPB isoform X1
RefseqXP_027123245.11e-128transcription factor-like protein DPB isoform X2
RefseqXP_027173114.11e-128transcription factor-like protein DPB isoform X1
RefseqXP_027173115.11e-128transcription factor-like protein DPB isoform X2
RefseqXP_027173131.11e-128transcription factor-like protein DPB isoform X1
RefseqXP_027173132.11e-128transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-93DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2G9FZK61e-133A0A2G9FZK6_9LAMI; E2F-like protein
STRINGXP_008234571.11e-123(Prunus mume)