PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_88729_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ZF-HD

Protein Properties

Length: 96aa MW: 10086 Da PI: 8.3748

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_88729_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	71.1	1.7e-22	2	41	18	58
ZF-HD_dimer 18 GghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 GghavDGCgEf+p+ g+egt ++lkCaAC+CHRnFHR+e++ cra_locus_88729_iso_1_len_286_ver_3 2 GGHAVDGCGEFLPA-GAEGTLDSLKCAACNCHRNFHRKETN 41 9**********9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51523	19.581	1	39	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	9.3E-21	2	40	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-14	2	39	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.2E-21	2	39	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
XGGHAVDGCG EFLPAGAEGT LDSLKCAACN CHRNFHRKET NGGHFHQPLL THHPHGAHFS 60 PFYRPPPPSG YLQIASHNPR PAPLALPSTS GGGGSR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010272957.1	8e-31	PREDICTED: zinc-finger homeodomain protein 1-like
Refseq	XP_020420676.1	1e-30	zinc-finger homeodomain protein 1
Swissprot	A2Z259	2e-20	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	2e-20	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1U8B1B9	2e-29	A0A1U8B1B9_NELNU; zinc-finger homeodomain protein 1-like
TrEMBL	A0A251NUJ3	3e-29	A0A251NUJ3_PRUPE; Uncharacterized protein
TrEMBL	M5W0K3	2e-29	M5W0K3_PRUPE; Uncharacterized protein
STRING	EMJ06891	4e-30	(Prunus persica)
STRING	XP_010272957.1	3e-30	(Nelumbo nucifera)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]