PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8887_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 108aa MW: 11841.4 Da PI: 5.6555

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8887_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	55	99	3	44
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44 WT+eE+ +l ++ +++ ++ + ++Ia ++ ++t ++ +r cra_locus_8887_iso_2_len_585_ver_3 55 DWTPEEQAILEEGLAKYSSEssivRYAKIAMHLD-NKTIRDVALRC 99 7*********************************.99999999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00249	1.1E-6	54	100	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.04E-6	55	102	IPR009057	Homeodomain-like
CDD	cd00167	1.15E-6	56	100	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.6E-5	56	102	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MDYFCPAEFS CSSASSPSSS AGVVSYNVKA PVSGIFDTSA SAVKFQPNLH GISMDWTPEE 60 QAILEEGLAK YSSESSIVRY AKIAMHLDNK TIRDVALRCR WLSVSFCY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015886660.1	1e-28	uncharacterized protein LOC107421838
TrEMBL	A0A2P2J3C1	1e-29	A0A2P2J3C1_RHIMU; Uncharacterized protein
STRING	evm.model.supercontig_9.326	1e-27	(Carica papaya)