PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8887_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 200aa MW: 22378.3 Da PI: 9.3543

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8887_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.4	5.8e-07	55	99	3	44
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44 WT+eE+ +l ++ +++ ++ + ++Ia ++ ++t ++ +r cra_locus_8887_iso_3_len_1630_ver_3 55 DWTPEEQAILEEGLAKYSSEssivRYAKIAMHLD-NKTIRDVALRC 99 7*********************************.99999998885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	5.3E-4	52	105	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-6	54	100	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.43E-6	55	108	IPR009057	Homeodomain-like
CDD	cd00167	5.50E-6	56	100	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-5	56	109	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MDYFCPAEFS CSSASSPSSS AGVVSYNVKA PVSGIFDTSA SAVKFQPNLH GISMDWTPEE 60 QAILEEGLAK YSSESSIVRY AKIAMHLDNK TIRDVALRCR WLSKRDVSKR RKEDINLTRK 120 SKDRKDKILD PSAMASNAGM QSGFPSYAQM LKNDNGISYN AISGITWQLL RQNAQTFEQI 180 STNLAAHQVN YHFRFPFSFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	125	RKSKDRKD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002272798.1	7e-61	PREDICTED: uncharacterized protein LOC100257710
TrEMBL	F6GX47	2e-59	F6GX47_VITVI; Uncharacterized protein
STRING	VIT_00s0226g00040.t01	3e-60	(Vitis vinifera)