PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8899_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB

Protein Properties

Length: 153aa MW: 16993.4 Da PI: 8.8238

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8899_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.8	1.2e-18	37	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l cra_locus_8899_iso_2_len_607_ver_3 37 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 84 79******************************************9996 PP
2	Myb_DNA-binding	25.1	4.1e-08	90	120	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g++T++E+ +++++++++G++ W++ a+++ cra_locus_8899_iso_2_len_607_ver_3 90 KGAFTADEERRIIELHAKMGNK-WARMAAEVC 120 799*****************.***9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.346	32	88	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-24	35	87	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-13	36	86	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-16	37	84	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.68E-25	38	114	IPR009057	Homeodomain-like
CDD	cd00167	8.17E-11	39	84	No hit	No description
PROSITE profile	PS50090	6.284	85	124	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	8.5E-14	88	120	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-4	89	133	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-7	90	121	IPR001005	SANT/Myb domain
CDD	cd00167	0.00622	92	127	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009723	Biological Process	response to ethylene
GO:0009751	Biological Process	response to salicylic acid
GO:0043068	Biological Process	positive regulation of programmed cell death
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0045926	Biological Process	negative regulation of growth
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MTRENEDQMV NKGGISSPSA EEGSGGGNVG GSGPLKKGPW TSAEDAILVE YVTKHGEGNW 60 NAVQKHSGLA RCGKSCRLRW ANHLRPDLKK GAFTADEERR IIELHAKMGN KWARMAAEVC 120 TSCRLCFLFQ QIKHTFKDIC SVALQYYIFL SYI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-21	35	116	25	105	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269\|PubMed:9150608}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00348	DAP	Transfer from AT3G11440	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin in aleurone cells. {ECO:0000269\|PubMed:9150608}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027179014.1	1e-69	transcription factor GAMYB-like
Swissprot	A2WW87	2e-54	GAM1_ORYSI; Transcription factor GAMYB
TrEMBL	A0A068UQ74	3e-68	A0A068UQ74_COFCA; Uncharacterized protein
STRING	Migut.N02411.1.p	5e-64	(Erythranthe guttata)