PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8916_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 143aa    MW: 16435.7 Da    PI: 10.272
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8916_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-194496456
                                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                         +++f ++q++ Le+ Fe +  p  + +++LA+klgL+ rqV +WFqN+Ra+ k
  cra_locus_8916_iso_1_len_1705_ver_3 44 KRRFDDTQVRSLETIFETEARPELRVKQQLANKLGLQPRQVAIWFQNKRARSK 96
                                         568************************************************99 PP
2HD-ZIP_I/II110.61.1e-3544132391
                          HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkee 76 
                                          krr+ + qv++LE+ Fe+e + e + K++la++Lglqprqva+WFqn+RAR k+kq+E++y++Lk++yd+l+++
  cra_locus_8916_iso_1_len_1705_ver_3  44 KRRFDDTQVRSLETIFETEARPELRVKQQLANKLGLQPRQVAIWFQNKRARSKSKQIEREYNVLKASYDSLASK 117
                                          9************************************************************************* PP

                          HD-ZIP_I/II  77 nerLekeveeLreel 91 
                                           e+L+ke+e+L  ++
  cra_locus_8916_iso_1_len_1705_ver_3 118 YESLKKENESLLIQV 132
                                          **********98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.4E-172999IPR009057Homeodomain-like
PROSITE profilePS5007116.3093898IPR001356Homeobox domain
SMARTSM003897.8E-1540102IPR001356Homeobox domain
PfamPF000461.6E-164496IPR001356Homeobox domain
CDDcd000862.70E-124499No hitNo description
Gene3DG3DSA:1.10.10.604.5E-1745105IPR009057Homeodomain-like
PRINTSPR000311.8E-56978IPR000047Helix-turn-helix motif
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
PRINTSPR000311.8E-57894IPR000047Helix-turn-helix motif
PfamPF021833.9E-1698133IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MFERSSAAAS APKASAWTVQ FPLNEMEVGL QSISATAYGK HGSKRRFDDT QVRSLETIFE  60
TEARPELRVK QQLANKLGLQ PRQVAIWFQN KRARSKSKQI EREYNVLKAS YDSLASKYES  120
LKKENESLLI QVNIVFYNTF KEI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027081733.13e-52homeobox-leucine zipper protein ATHB-12-like
RefseqXP_027183124.13e-52homeobox-leucine zipper protein ATHB-12-like
SwissprotP468977e-33ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A068UX973e-54A0A068UX97_COFCA; Uncharacterized protein
STRINGXP_009796883.11e-45(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]