PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8916_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HD-ZIP

Protein Properties

Length: 232aa MW: 26373.5 Da PI: 5.4401

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8916_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.9e-19	44	96	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f ++q++ Le+ Fe + p + +++LA+klgL+ rqV +WFqN+Ra+ k cra_locus_8916_iso_2_len_1725_ver_3 44 KRRFDDTQVRSLETIFETEARPELRVKQQLANKLGLQPRQVAIWFQNKRARSK 96 568************************************************99 PP
2	HD-ZIP_I/II	108.1	6.5e-35	44	134	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkee 76 krr+ + qv++LE+ Fe+e + e + K++la++Lglqprqva+WFqn+RAR k+kq+E++y++Lk++yd+l+++ cra_locus_8916_iso_2_len_1725_ver_3 44 KRRFDDTQVRSLETIFETEARPELRVKQQLANKLGLQPRQVAIWFQNKRARSKSKQIEREYNVLKASYDSLASK 117 9*********************************************************************** PP HD-ZIP_I/II 77 nerLekeveeLreelke 93 e+L+ke+e+L ++++ cra_locus_8916_iso_2_len_1725_ver_3 118 YESLKKENESLLIQVEK 134 *********988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-17	29	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.309	38	98	IPR001356	Homeobox domain
SMART	SM00389	7.8E-15	40	102	IPR001356	Homeobox domain
Pfam	PF00046	4.7E-16	44	96	IPR001356	Homeobox domain
CDD	cd00086	1.36E-13	44	99	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-16	45	105	IPR009057	Homeodomain-like
PRINTS	PR00031	3.5E-5	69	78	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	73	96	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.5E-5	78	94	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.8E-17	98	138	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MFERSSAAAS APKASAWTVQ FPLNEMEVGL QSISATAYGK HGSKRRFDDT QVRSLETIFE 60 TEARPELRVK QQLANKLGLQ PRQVAIWFQN KRARSKSKQI EREYNVLKAS YDSLASKYES 120 LKKENESLLI QVEKLRTLTA KMDSEEHHDK EDIKLVINDK LNFPLETYST QLNMSICHKT 180 NDDELDYLGQ KSTGLDVAQI ADVSLTSPEN GCSLESTDLV DNSSCNSNWW EF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027081733.1	2e-79	homeobox-leucine zipper protein ATHB-12-like
Refseq	XP_027183124.1	2e-79	homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A068UX97	7e-82	A0A068UX97_COFCA; Uncharacterized protein
STRING	XP_009796883.1	2e-65	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10273	21	25