PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8963_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 272aa    MW: 31223.8 Da    PI: 6.9199
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8963_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-07174221347
                                          SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
                      Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                                          +WT+eE++++ d vk  ++      W+   + ++ g+++ +++s+++++
  cra_locus_8963_iso_2_len_1532_ver_3 174 SWTKEEEKKFQDTVKSNPSSlekyFWDELVKAFP-GKSRRSLVSYYFNV 221
                                          6*****************99**************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511568.72772125IPR000949ELM2 domain
SMARTSM011893.9E-474126IPR000949ELM2 domain
CDDcd001677.69E-4174222No hitNo description
SuperFamilySSF466899.36E-5174221IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MHPFMYDDHV RTSPEKLRFS QRLISAKDTL KKTGGQISSM SSSSGTDEDS VDPQSDSIVD  60
PLPDYLVNRR KKRMSLGPQH QADVPEWTGE AYESDNKWLG TKMWPLEKAE QSRNLIERER  120
VGRGRQDSCG CQFPGSNECV RFHISEKRMR LRLELGPAFY RWDFNDMGEE VACSWTKEEE  180
KKFQDTVKSN PSSLEKYFWD ELVKAFPGKS RRSLVSYYFN VFLLRQRGQQ NRTTPVEINS  240
DEEDAAGFEA EAAPNPGSIF CSPKKANPSS KQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108380.11e-111AT-rich interactive domain-containing protein 1-like isoform X1
RefseqXP_027108381.11e-111AT-rich interactive domain-containing protein 1-like isoform X1
RefseqXP_027108382.11e-112AT-rich interactive domain-containing protein 1-like isoform X2
RefseqXP_027115228.11e-111AT-rich interactive domain-containing protein 1-like
RefseqXP_027115229.11e-111AT-rich interactive domain-containing protein 1-like
RefseqXP_027158877.11e-111AT-rich interactive domain-containing protein 1
RefseqXP_027158878.11e-111AT-rich interactive domain-containing protein 1
TrEMBLA0A068UK101e-110A0A068UK10_COFCA; Uncharacterized protein
STRINGMigut.B01773.1.p9e-97(Erythranthe guttata)