PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_898_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 216aa MW: 23825.9 Da PI: 8.7534

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_898_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	56.9	7.1e-18	139	177	19	58
CBFB_NFYA 19 qkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 q+Rak+e+e+k ksrkpylheSRh hAlrR+Rg+gGrF cra_locus_898_iso_1_len_1362_ver_3 139 QSRAKAESENKA-LKSRKPYLHESRHLHALRRARGTGGRF 177 79*******9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	22.916	120	180	IPR001289	Nuclear transcription factor Y subunit A
SMART	SM00521	1.1E-14	122	180	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.3E-14	139	177	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
XGRGEEFPDY FLFSGPKIKK KSKIKENTPP SGFSCTVQNF AAEVHQVFRV CVMTSSVQNH 60 SGSDNDEADE QLSHSESQIQ SPCQVTGMSH PSVTAPGMQY VAPPQLXPAN SLAQAAYPYP 120 DPYYRSIFAP YDAQPYPAQS RAKAESENKA LKSRKPYLHE SRHLHALRRA RGTGGRFLNA 180 KKGENKPKDA ESGDKPQSNI NLNAEKNDHL PSENAS

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087816.1	3e-72	nuclear transcription factor Y subunit A-7-like
Refseq	XP_027184808.1	3e-72	nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	4e-27	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A068V9V1	3e-70	A0A068V9V1_COFCA; Uncharacterized protein
STRING	XP_009362237.1	3e-60	(Pyrus x bretschneideri)
STRING	VIT_10s0003g04650.t01	3e-60	(Vitis vinifera)
STRING	XP_008372229.1	4e-60	(Malus domestica)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]