PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_898_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 207aa MW: 22906.8 Da PI: 8.2239

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_898_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.6	3.8e-32	112	168	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k ksrkpylheSRh hAlrR+Rg+gGrF cra_locus_898_iso_5_len_1821_ver_3 112 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGTGGRF 168 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.8E-36	110	171	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.559	111	171	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.9E-27	113	168	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	9.0E-24	114	136	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	116	136	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	9.0E-24	145	168	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MXXTARDCDN DEADEQLSHS ESQIQSPCQV TGMSHPSVTA PGMQYVAPPQ LXPANSLAQA 60 AYPYPDPYYR SIFAPYDAQP YPAQPYPAPP MVHLQLMGIQ QAGVPLPSDA VEEPVFVNAK 120 QYHGILRRRQ SRAKAESENK ALKSRKPYLH ESRHLHALRR ARGTGGRFLN AKKGENKPKD 180 AESGDKPQSN INLNAEKNDH LPSENAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	111	172	1	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087816.1	1e-115	nuclear transcription factor Y subunit A-7-like
Refseq	XP_027184808.1	1e-115	nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	8e-61	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A068V9V1	1e-113	A0A068V9V1_COFCA; Uncharacterized protein
STRING	VIT_10s0003g04650.t01	1e-100	(Vitis vinifera)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]