PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_898_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 262aa MW: 28957.9 Da PI: 8.9899

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_898_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102	5.8e-32	167	223	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k ksrkpylheSRh hAlrR+Rg+gGrF cra_locus_898_iso_6_len_1500_ver_3 167 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGTGGRF 223 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.8E-36	165	226	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.559	166	226	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.4E-27	168	223	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.4E-23	169	191	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	171	191	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.4E-23	200	223	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
XGRGEEFPDY FLFSGPKIKK KSKIKENTPP SGFSCTVQNF AAEVHQVFRV CVMTSSVQNH 60 SGSDNDEADE QLSHSESQIQ SPCQVTGMSH PSVTAPGMQY VAPPQLXPAN SLAQAAYPYP 120 DPYYRSIFAP YDAQPYPAQP YPAPPMVHLQ LMGIQQAGVP LPSDAVEEPV FVNAKQYHGI 180 LRRRQSRAKA ESENKALKSR KPYLHESRHL HALRRARGTG GRFLNAKKGE NKPKDAESGD 240 KPQSNINLNA EKNDHLPSEN AS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-20	166	227	1	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087816.1	1e-116	nuclear transcription factor Y subunit A-7-like
Refseq	XP_027184808.1	1e-116	nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	6e-62	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A068V9V1	1e-114	A0A068V9V1_COFCA; Uncharacterized protein
STRING	XP_006468304.1	1e-102	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]