PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_90834_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family M-type_MADS
Protein Properties Length: 188aa    MW: 21392.4 Da    PI: 9.8597
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_90834_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.72.3e-112161242
                                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                         +i n+ +    f kR++g+l K +EL +LC+++++ ii+s+
  cra_locus_90834_iso_1_len_678_ver_3 21 FIVNDAKGRAVFKKRKKGLLNKLSELTTLCGINACAIIYSE 61
                                         67788888889****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-111271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.9281261IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-151487IPR002100Transcription factor, MADS-box
CDDcd002661.10E-201596No hitNo description
PfamPF003193.1E-112261IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
PLSSDPPLIX HPHHRKVKLA FIVNDAKGRA VFKKRKKGLL NKLSELTTLC GINACAIIYS  60
EFDSEPDVWP STLVAQQLIS QFKCLPEMMK GRKMLNQKAY LRERIVKLKE QSNKQLSENH  120
EKDXVELMFK CLLTDKRELD KLTPTDLDDL EGNFEKRMTG INLRLNGDAK KKVVLDGDKA  180
QSNPASPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13236KKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382260.21e-47agamous-like MADS-box protein AGL80
TrEMBLU5GF695e-47U5GF69_POPTR; Uncharacterized protein
STRINGPOPTR_0005s00420.17e-49(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367