PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_91283_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 257aa MW: 27918 Da PI: 8.9986

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_91283_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.1	2.3e-41	94	193	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +CaaCk+lrr+Ca++C+++pyf ++p kfa+vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvy cra_locus_91283_iso_1_len_768_ver_3 94 PCAACKLLRRRCAEECPFSPYFSPHEPLKFAAVHKIFGASNVSKMLMEVPEAQRADAANSLVYEANVRLRDPVY 167 7*********************************************************************** PP DUF260 75 Gavgvilklqqqleqlkaelallkee 100 G++g i++lqqq+++l+ael+++++e cra_locus_91283_iso_1_len_768_ver_3 168 GCMGAISTLQQQVQTLQAELHAVRSE 193 ********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.558	93	194	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-41	94	191	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
XLLFLLTILS SFLFSSSLQP FNLSFSLFPI PSQELHNHWR NWKSWMSRER ERLDEIAKKL 60 KTELDASGGG GGGGQIMGRR HMLGPPGSLN TITPCAACKL LRRRCAEECP FSPYFSPHEP 120 LKFAAVHKIF GASNVSKMLM EVPEAQRADA ANSLVYEANV RLRDPVYGCM GAISTLQQQV 180 QTLQAELHAV RSEILRYKYR EAAAANTLMA ASTLVSSSTG PVSAVAVAAA DQMPLAPATP 240 TPHPPPPPPP PPPPPPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-43	94	201	11	118	LOB family transfactor Ramosa2.1
5ly0_B	3e-43	94	201	11	118	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027091071.1	2e-98	LOB domain-containing protein 15-like isoform X2
Swissprot	Q8L5T5	2e-77	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	B9S4B8	3e-94	B9S4B8_RICCO; LOB domain-containing protein, putative
STRING	XP_002520837.1	5e-95	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]