PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_91445_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 148aa MW: 16492.1 Da PI: 8.1228

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_91445_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129	2.1e-40	1	92	9	100
DUF260 9 rrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 rr+CakdCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++ cra_locus_91445_iso_1_len_443_ver_3 1 RRRCAKDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISS 74 79********************************************************************** PP DUF260 83 lqqqleqlkaelallkee 100 lqqq++ l+++lal+++e cra_locus_91445_iso_1_len_443_ver_3 75 LQQQIDFLQTQLALAQAE 92 ***********99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	3.2E-39	1	90	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	23.726	1	93	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
RRRCAKDCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQE LPEHQRGDAV SSMVYEANAR 60 VRDPVYGCVG AISSLQQQID FLQTQLALAQ AEVVQMRMRQ FSNNSHSHSH GAQTTNSSPE 120 HNINIASPNS STRHNTQSHL YTMGESLX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	1	95	19	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	1	95	19	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027077308.1	6e-77	LOB domain-containing protein 4-like
Swissprot	Q9SHE9	6e-56	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A068VA16	1e-75	A0A068VA16_COFCA; Uncharacterized protein
STRING	XP_009603165.1	4e-71	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669