PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9152_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 439aa    MW: 48016.2 Da    PI: 6.3576
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9152_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.94.4e-28307355251
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEE CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveit 51 
                                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+
  cra_locus_9152_iso_3_len_1644_ver_3 307 EDGYNWRKYGQKQVKGSEYPRSYYKCTHQNCQVKKKVERSQ-EGHITEII 355
                                          8***************************************9.99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-23304354IPR003657WRKY domain
SuperFamilySSF1182906.28E-22305353IPR003657WRKY domain
SMARTSM007744.5E-26306358IPR003657WRKY domain
PROSITE profilePS5081120.3307347IPR003657WRKY domain
PfamPF031064.8E-21307355IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGDWMPPSPS PRTLLSMLGD DVGSRSISDP IGEKIEGFSF PGPQEYMAST NADEKNGSQA  60
GLGADEAAKF SGMYEQKMSS RGGLLERRAA RAGFNAPRLN TESIRAADLL QNQEVRSPYL  120
TIPPGLSPTT LLDSPVFVNN SLVQPSPTTG KFQFVSNANS RSSTVMTEFP DKSRETFFGN  180
INPSSFAFRP MAESGPSLFF GTSNRVNPTS LPQQSFPSIE VSVQSQNVHP SSLERPNTTA  240
LNQQADFSKP STEKETGVSN NNIASEPRTL YNVGGGMDHS PPLDEQQDED ADQRSNGDPN  300
IGGAPAEDGY NWRKYGQKQV KGSEYPRSYY KCTHQNCQVK KKVERSQEGH ITEIIMALVL  360
XINQHGLSNL GLTGLGHNQI RIPSLPVHQY LGQQPRQPMN DMGLMLPKGE PKVEPVSDPG  420
LNHSNGSSVY HQVMHRMQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-133083561662WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027127652.11e-172probable WRKY transcription factor 2 isoform X1
RefseqXP_027127653.11e-172probable WRKY transcription factor 2 isoform X1
RefseqXP_027127654.11e-172probable WRKY transcription factor 2 isoform X1
RefseqXP_027127655.11e-172probable WRKY transcription factor 2 isoform X1
RefseqXP_027127656.11e-172probable WRKY transcription factor 2 isoform X1
RefseqXP_027170840.11e-172probable WRKY transcription factor 2 isoform X1
RefseqXP_027170841.11e-172probable WRKY transcription factor 2 isoform X1
RefseqXP_027170842.11e-172probable WRKY transcription factor 2 isoform X1
RefseqXP_027170844.11e-172probable WRKY transcription factor 2 isoform X1
RefseqXP_027170845.11e-172probable WRKY transcription factor 2 isoform X1
TrEMBLA0A336RDJ40.0A0A336RDJ4_CATRO; WRKY transcription factor 2
STRINGPGSC0003DMT4000569521e-140(Solanum tuberosum)