PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9152_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 586aa    MW: 63912.9 Da    PI: 6.7712
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9152_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32163220260
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  cra_locus_9152_iso_5_len_1957_ver_3 163 EDGYNWRKYGQKQVKGSEYPRSYYKCTHQNCQVKKKVERSQ-EGHITEIIYKGAHNHPK 220
                                          8****************************************.***************85 PP
2WRKY104.17.5e-33375433159
                                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  cra_locus_9152_iso_5_len_1957_ver_3 375 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 433
                                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-29160221IPR003657WRKY domain
SuperFamilySSF1182909.55E-26161221IPR003657WRKY domain
SMARTSM007744.4E-36162220IPR003657WRKY domain
PROSITE profilePS5081123.365163221IPR003657WRKY domain
PfamPF031066.7E-25163219IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-37360435IPR003657WRKY domain
SuperFamilySSF1182901.2E-28367435IPR003657WRKY domain
PROSITE profilePS5081138.664370435IPR003657WRKY domain
SMARTSM007741.5E-37375434IPR003657WRKY domain
PfamPF031064.9E-25376433IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
PSPTTGKFQF VSNANSRSST VMTEFPDKSR ETFFGNINPS SFAFRPMAES GPSLFFGTSN  60
RVNPTSLPQQ SFPSIEVSVQ SQNVHPSSLE RPNTTALNQQ ADFSKPSTEK ETGVSNNNIA  120
SEPRTLYNVG GGMDHSPPLD EQQDEDADQR SNGDPNIGGA PAEDGYNWRK YGQKQVKGSE  180
YPRSYYKCTH QNCQVKKKVE RSQEGHITEI IYKGAHNHPK PPPNRRSALG SSNALSDMQL  240
ENSEQAGTGA DGDPLWANVQ RGNGASEGRN DNPEVTSSAM MGSEYCNGAN SLQAQNGSQF  300
ETGDAVDASS TFSNDEEDDD RATHGSVSLG YDGEGDESES KRRKIETYPT DMSGASRAIR  360
EPRVVVQTTS EVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTSAGCTVRK HVERASHDLK  420
SVITTYEGKH NHDVPAARNS SHVNSGGASC TLPTQPAAVQ TQVHRPEPSS QLHNSMTQFE  480
RPSSLASFAL PGRPPLGPPN HHHGFGFGIN QHGLSNLGLT GLGHNQIRIP SLPVHQYLGQ  540
QPRQPMNDMG LMLPKGEPKV EPVSDPGLNH SNGSSVYHQV MHRMQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37163436878Probable WRKY transcription factor 4
2lex_A8e-37163436878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027170840.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170841.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170842.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170844.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170845.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170847.10.0probable WRKY transcription factor 2 isoform X3
SwissprotQ9FG771e-153WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A336RDJ40.0A0A336RDJ4_CATRO; WRKY transcription factor 2
STRINGVIT_19s0015g01870.t010.0(Vitis vinifera)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]