PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9152_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 698aa    MW: 76187.1 Da    PI: 6.1497
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9152_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.5e-32307364260
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  cra_locus_9152_iso_6_len_2220_ver_3 307 EDGYNWRKYGQKQVKGSEYPRSYYKCTHQNCQVKKKVERSQ-EGHITEIIYKGAHNHPK 364
                                          8****************************************.***************85 PP
2WRKY34.54.1e-11519540122
                                          ---SS-EEEEEEE--TT-SS-E CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                                          ldDgy+WrKYGqK+vkg+++pr
  cra_locus_9152_iso_6_len_2220_ver_3 519 LDDGYRWRKYGQKVVKGNPNPR 540
                                          59*******************9 PP
3WRKY52.68.9e-175796182059
                                          S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY  20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                            rsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  cra_locus_9152_iso_6_len_2220_ver_3 579 XCRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 618
                                          57*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28304365IPR003657WRKY domain
SuperFamilySSF1182901.2E-25305365IPR003657WRKY domain
SMARTSM007744.4E-36306364IPR003657WRKY domain
PfamPF031068.5E-25307363IPR003657WRKY domain
PROSITE profilePS5081123.365307365IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-34504539IPR003657WRKY domain
SuperFamilySSF1182901.96E-9511541IPR003657WRKY domain
PROSITE profilePS5081130.928514620IPR003657WRKY domain
SMARTSM007748.7E-31519619IPR003657WRKY domain
PfamPF031063.4E-7520541IPR003657WRKY domain
SuperFamilySSF1182905.49E-13577620IPR003657WRKY domain
PfamPF031066.6E-11580618IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-34581620IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MGDWMPPSPS PRTLLSMLGD DVGSRSISDP IGEKIEGFSF PGPQEYMAST NADEKNGSQA  60
GLGADEAAKF SGMYEQKMSS RGGLLERRAA RAGFNAPRLN TESIRAADLL QNQEVRSPYL  120
TIPPGLSPTT LLDSPVFVNN SLVQPSPTTG KFQFVSNANS RSSTVMTEFP DKSRETFFGN  180
INPSSFAFRP MAESGPSLFF GTSNRVNPTS LPQQSFPSIE VSVQSQNVHP SSLERPNTTA  240
LNQQADFSKP STEKETGVSN NNIASEPRTL YNVGGGMDHS PPLDEQQDED ADQRSNGDPN  300
IGGAPAEDGY NWRKYGQKQV KGSEYPRSYY KCTHQNCQVK KKVERSQEGH ITEIIYKGAH  360
NHPKPPPNRR SALGSSNALS DMQLENSEQA GTGADGDPLW ANVQRGNGAS EGRNDNPEVT  420
SSAMMGSEYC NGANSLQAQN GSQFETGDAV DASSTFSNDE EDDDRATHGS VSLGYDGEGD  480
ESESKRRKIE TYPTDMSGAS RAIREPRVVV QTTSEVDILD DGYRWRKYGQ KVVKGNPNPR  540
YXLFIQLKGS ILYIKNCDRN IIEYIVMLVV LEVLECSFXC RSYYKCTSAG CTVRKHVERA  600
SHDLKSVITT YEGKHNHDVP AARNSSHVNS GGASCTLPTQ PAAVQTQVHR PEPSSQLHNS  660
MTQFERPSSL ASFALPGRPP LGPPNHHHGF GFGINQHX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-29307621878Probable WRKY transcription factor 4
2lex_A2e-29307621878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027170840.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170841.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170842.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170844.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170845.10.0probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG771e-162WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A336RDJ40.0A0A336RDJ4_CATRO; WRKY transcription factor 2
STRINGVIT_19s0015g01870.t010.0(Vitis vinifera)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]