PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9152_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 583aa    MW: 63585.2 Da    PI: 5.1111
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9152_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32307364260
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  cra_locus_9152_iso_7_len_1876_ver_3 307 EDGYNWRKYGQKQVKGSEYPRSYYKCTHQNCQVKKKVERSQ-EGHITEIIYKGAHNHPK 364
                                          8****************************************.***************85 PP
2WRKY56.46.1e-18554582129
                                          ---SS-EEEEEEE--TT-SS-EEEEEE-S CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCts 29 
                                          ldDgy+WrKYGqK+vkg+++prsYY+Cts
  cra_locus_9152_iso_7_len_1876_ver_3 554 LDDGYRWRKYGQKVVKGNPNPRSYYKCTS 582
                                          59**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-29304365IPR003657WRKY domain
SuperFamilySSF1182909.42E-26305365IPR003657WRKY domain
SMARTSM007744.4E-36306364IPR003657WRKY domain
PfamPF031066.7E-25307363IPR003657WRKY domain
PROSITE profilePS5081123.365307365IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-20539582IPR003657WRKY domain
SuperFamilySSF1182902.75E-15546582IPR003657WRKY domain
PROSITE profilePS5081121.459549583IPR003657WRKY domain
SMARTSM007741.7E-7554583IPR003657WRKY domain
PfamPF031061.3E-12555582IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MGDWMPPSPS PRTLLSMLGD DVGSRSISDP IGEKIEGFSF PGPQEYMAST NADEKNGSQA  60
GLGADEAAKF SGMYEQKMSS RGGLLERRAA RAGFNAPRLN TESIRAADLL QNQEVRSPYL  120
TIPPGLSPTT LLDSPVFVNN SLVQPSPTTG KFQFVSNANS RSSTVMTEFP DKSRETFFGN  180
INPSSFAFRP MAESGPSLFF GTSNRVNPTS LPQQSFPSIE VSVQSQNVHP SSLERPNTTA  240
LNQQADFSKP STEKETGVSN NNIASEPRTL YNVGGGMDHS PPLDEQQDED ADQRSNGDPN  300
IGGAPAEDGY NWRKYGQKQV KGSEYPRSYY KCTHQNCQVK KKVERSQEGH ITEIIYKGAH  360
NHPKPPPNRR SALGSSNALS DMQLENSEQA GTGADGDPLW ANVQRGNGAS EGRNDNPEVT  420
SSAMMGSEYC NGANSLQAQN GSQFETGDAV DASSTFSNDE EDDDRATHGS VSLGYDGEGD  480
ESESKRRFSC ISVYFVGXIV FNXVHVKPYL VPLTNSSTRF CRKIETYPTD MSGASRAIRE  540
PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-18307582877Probable WRKY transcription factor 4
2lex_A7e-18307582877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027170840.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170841.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170842.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170844.10.0probable WRKY transcription factor 2 isoform X1
RefseqXP_027170845.10.0probable WRKY transcription factor 2 isoform X1
TrEMBLA0A336RDJ40.0A0A336RDJ4_CATRO; WRKY transcription factor 2
STRINGVIT_19s0015g01870.t010.0(Vitis vinifera)