PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9152_iso_8
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 684aa    MW: 74362.6 Da    PI: 6.7726
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9152_iso_8genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32261318260
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  cra_locus_9152_iso_8_len_2349_ver_3 261 EDGYNWRKYGQKQVKGSEYPRSYYKCTHQNCQVKKKVERSQ-EGHITEIIYKGAHNHPK 318
                                          8****************************************.***************85 PP
2WRKY103.89.3e-33473531159
                                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  cra_locus_9152_iso_8_len_2349_ver_3 473 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 531
                                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28258319IPR003657WRKY domain
SuperFamilySSF1182901.18E-25259319IPR003657WRKY domain
SMARTSM007744.4E-36260318IPR003657WRKY domain
PROSITE profilePS5081123.365261319IPR003657WRKY domain
PfamPF031068.3E-25261317IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-37458533IPR003657WRKY domain
SuperFamilySSF1182901.44E-28465533IPR003657WRKY domain
PROSITE profilePS5081138.664468533IPR003657WRKY domain
SMARTSM007741.5E-37473532IPR003657WRKY domain
PfamPF031066.0E-25474531IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MASTNADEKN GSQAGLGADE AAKFSGMYEQ KMSSRGGLLE RRAARAGFNA PRLNTESIRA  60
ADLLQNQEVR SPYLTIPPGL SPTTLLDSPV FVNNSLVQPS PTTGKFQFVS NANSRSSTVM  120
TEFPDKSRET FFGNINPSSF AFRPMAESGP SLFFGTSNRV NPTSLPQQSF PSIEVSVQSQ  180
NVHPSSLERP NTTALNQQAD FSKPSTEKET GVSNNNIASE PRTLYNVGGG MDHSPPLDEQ  240
QDEDADQRSN GDPNIGGAPA EDGYNWRKYG QKQVKGSEYP RSYYKCTHQN CQVKKKVERS  300
QEGHITEIIY KGAHNHPKPP PNRRSALGSS NALSDMQLEN SEQAGTGADG DPLWANVQRG  360
NGASEGRNDN PEVTSSAMMG SEYCNGANSL QAQNGSQFET GDAVDASSTF SNDEEDDDRA  420
THGSVSLGYD GEGDESESKR RKIETYPTDM SGASRAIREP RVVVQTTSEV DILDDGYRWR  480
KYGQKVVKGN PNPRSYYKCT SAGCTVRKHV ERASHDLKSV ITTYEGKHNH DVPAARNSSH  540
VNSGGASCTL PTQPAAVQTQ VHRPEPSSQL HNSMTQFERP SSLASFALPG RPPLGPPNHH  600
HGFGFGINQH GLSNLGLTGL GHNQIRIPSL PVHQYLGQQP RQPMNDMGLM LPKGEPKVEP  660
VSDPGLNHSN GSSVYHQVMH RMQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36261534878Probable WRKY transcription factor 4
2lex_A1e-36261534878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027170847.10.0probable WRKY transcription factor 2 isoform X3
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A336RDJ40.0A0A336RDJ4_CATRO; WRKY transcription factor 2
STRINGVIT_19s0015g01870.t010.0(Vitis vinifera)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]