PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9229_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 243aa    MW: 27758.1 Da    PI: 7.3386
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9229_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM301.5e-091610942128
                                 NAM  42 vePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy. 109
                                          +Pw+   +   k+ +++k +y  ++ +k +a+ ++  r++  g+W  +  +  ++s   k++ +g kk++ f  
  cra_locus_9229_iso_1_len_783_ver_3  16 DDPWQTMvTesgKLIKDTKYLYVITRLKKISASRNNIIRVAGCGTWDGQTGKYYIKSVgdKNKIIGFKKMFNFKp 90 
                                         578887522232222233344555666666666666778999*****55555566555558888*********95 PP

                                 NAM 110 kgrapkgektdWvmheyrl 128
                                         k  + + +  +W+mhey+l
  cra_locus_9229_iso_1_len_783_ver_3  91 KIVEGNNNYGKWIMHEYHL 109
                                         3356666788********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.9241131IPR003441NAC domain
PfamPF023654.4E-717109IPR003441NAC domain
SuperFamilySSF1019412.88E-1228130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
XFYSENGTPW IIFKQDDPWQ TMVTESGKLI KDTKYLYVIT RLKKISASRN NIIRVAGCGT  60
WDGQTGKYYI KSVGDKNKII GFKKMFNFKP KIVEGNNNYG KWIMHEYHLD GDFLKGISQT  120
NNFVICRIKW EFCSNDSNGV SETPLLNSSS SSVSETAATS CFPGFDDLIN IEEIINGDWG  180
KFGEKEVSFI EKVDHILTEE EDGEWGKFII GTRSSKRLNN SDSCFDSWNS NSKDVEIVKK  240
KRI
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1948623