PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9268_iso_9

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 344aa MW: 40244.6 Da PI: 7.1352

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9268_iso_9	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.6	4.3e-11	79	120	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W + E++ll++++k++G g+W +a+++g ++ + qc +++++ cra_locus_9268_iso_9_len_1677_ver_3 79 WNAKEELLLLEGIKMYGFGNWYEVAEHVG-TKDRTQCLDHYNS 120 ***************************.999999***85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF025024	8.0E-101	7	343	IPR016827	Transcriptional adaptor 2
SMART	SM00291	2.5E-6	15	60	IPR000433	Zinc finger, ZZ-type
SuperFamily	SSF57850	1.65E-12	19	82	No hit	No description
PROSITE profile	PS50135	9.969	19	62	IPR000433	Zinc finger, ZZ-type
CDD	cd02335	5.28E-17	19	67	No hit	No description
Pfam	PF00569	1.0E-6	19	51	IPR000433	Zinc finger, ZZ-type
PROSITE pattern	PS01357	0	21	48	IPR000433	Zinc finger, ZZ-type
SuperFamily	SSF46689	2.09E-12	74	125	IPR009057	Homeodomain-like
PROSITE profile	PS51293	20.331	74	126	IPR017884	SANT domain
SMART	SM00717	2.0E-8	75	124	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-10	78	120	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-8	78	121	IPR009057	Homeodomain-like
CDD	cd00167	2.74E-9	79	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006357	Biological Process	regulation of transcription from RNA polymerase II promoter
GO:0016573	Biological Process	histone acetylation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
METAYAGEGQ TVREEKVFYQ CNYCNKDIYR KIHIKCLRCS DFNLCVECFS VAAEVYPHRS 60 NHPYTVMDNL FFPLMCTDWN AKEELLLLEG IKMYGFGNWY EVAEHVGTKD RTQCLDHYNS 120 IYVHSPCVPV QEKYTEHLSM AHRQIIKDVS TKSVCDGNNA LAEGAKRAPG VIESNDSHSK 180 SKEDCNAEGS VREKQARTSV EFVTEYGNDA QQLLADIEFK ETDTDDEREL KLRVLRFYSK 240 RLDERKCRKK FLLERNLLHP HLVETYLSPE EKEICRPYRV FMRYHSTEEH ANLLRTVVEE 300 HRIRKRIQDL KDARAAGCRT PTEVERYIEQ KSKRMKESTR AGPC

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

METAYAGEGQ TVREEKVFYQ CNYCNKDIYR KIHIKCLRCS DFNLCVECFS VAAEVYPHRS  60
NHPYTVMDNL FFPLMCTDWN AKEELLLLEG IKMYGFGNWY EVAEHVGTKD RTQCLDHYNS  120
IYVHSPCVPV QEKYTEHLSM AHRQIIKDVS TKSVCDGNNA LAEGAKRAPG VIESNDSHSK  180
SKEDCNAEGS VREKQARTSV EFVTEYGNDA QQLLADIEFK ETDTDDEREL KLRVLRFYSK  240
RLDERKCRKK FLLERNLLHP HLVETYLSPE EKEICRPYRV FMRYHSTEEH ANLLRTVVEE  300
HRIRKRIQDL KDARAAGCRT PTEVERYIEQ KSKRMKESTR AGPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6cw3_E	1e-23	19	132	5	118	Transcriptional adapter 2
6cw3_G	1e-23	19	132	5	118	Transcriptional adapter 2
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Functional Description ? help Back to Top
Source	Description
UniProt	Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803649.1	1e-134	PREDICTED: transcriptional adapter ADA2-like isoform X3
Refseq	XP_016449025.1	1e-134	PREDICTED: transcriptional adapter ADA2-like isoform X2
Swissprot	Q75LL6	1e-111	TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBL	A0A1S3Y9Y1	1e-132	A0A1S3Y9Y1_TOBAC; Transcriptional adapter
TrEMBL	A0A1U7YWU6	1e-132	A0A1U7YWU6_NICSY; Transcriptional adapter
STRING	XP_009803647.1	1e-132	(Nicotiana sylvestris)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]