PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9338_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 796aa MW: 89102 Da PI: 6.3263

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9338_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.6e-07	40	82	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I +++ + q++++++ + cra_locus_9338_iso_4_len_2552_ver_3 40 AWTHQEEESFFSALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 82 6***************99.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.56E-9	33	87	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.458	36	87	IPR017884	SANT domain
SMART	SM00717	6.0E-4	37	85	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-4	38	85	IPR009057	Homeodomain-like
CDD	cd00167	5.56E-4	40	83	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence Send to blast
XGLHPENVVI VDGASGASKS LQDHAAPQQP VKKQTRQWAA WTHQEEESFF SALRQVGKNF 60 EKITCRVQSK NKDQVRHYYY RLVRRMNKLL GPELWLDAKN SKDTNAAMLR WWSLLEKYSC 120 KASKLHLKPR RFKLIVETLE NQLLKDRKKM VRKRSSQGEN NSVIAPATIL DQGRVPLPES 180 RTVKSVLVDT QNIQKFVTGK GPTLKRQVNM GINRSNYKSE ASSLKSSRHR RKTGGASTAA 240 YKRWEKAAIA GVSLVADAAE HLERTSTDRE VEHTEQNGYE YSEKDIPSLR NNLQNSEKLK 300 LQLFPIDEST RRALEMDNRN PHLELTLSTR KKISSVLEHL NRKWGDSNIA SGELMLFPYS 360 VQNANSEGYH RWTKDSTLTA ADVYALIGSP AVFRLRYGWF PLCEIGSMRS QAPSSCSNEQ 420 NRSMNAVHEC VLDSLPKSSP PTHHEHEKLS DFHKDRVSST PKMALTASAS MSTEMIQHCS 480 MPDISISRSS NHTSAPLLDG KESELCTIVE EDEHHGELRT QNAALSPGDW ADSLTNISFG 540 DLLSEPSENV DANGIDSDCP RTSDCLQQTP FTCDSFDAAI AAHIRKHGCR PSSEPPVLSH 600 APCIWDAEET CDAFSFQKNV FSENVDAFEK FPSQTFGEIA ETRAPQPGRE AEALSDADKT 660 FIDDPMDKSE SDGHTSDSSI RDFNSLTDIY WPDSLGALDL DIPSCRYRTD DLILSDSLGG 720 LNRLIASSLD AFQNCSFFGS EKKDSATVEA GETASVSDLK ISTEGXSICK WRKLELAEED 780 EHFDPEVSHQ KCLVFT

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence Send to blast

XGLHPENVVI VDGASGASKS LQDHAAPQQP VKKQTRQWAA WTHQEEESFF SALRQVGKNF  60
EKITCRVQSK NKDQVRHYYY RLVRRMNKLL GPELWLDAKN SKDTNAAMLR WWSLLEKYSC  120
KASKLHLKPR RFKLIVETLE NQLLKDRKKM VRKRSSQGEN NSVIAPATIL DQGRVPLPES  180
RTVKSVLVDT QNIQKFVTGK GPTLKRQVNM GINRSNYKSE ASSLKSSRHR RKTGGASTAA  240
YKRWEKAAIA GVSLVADAAE HLERTSTDRE VEHTEQNGYE YSEKDIPSLR NNLQNSEKLK  300
LQLFPIDEST RRALEMDNRN PHLELTLSTR KKISSVLEHL NRKWGDSNIA SGELMLFPYS  360
VQNANSEGYH RWTKDSTLTA ADVYALIGSP AVFRLRYGWF PLCEIGSMRS QAPSSCSNEQ  420
NRSMNAVHEC VLDSLPKSSP PTHHEHEKLS DFHKDRVSST PKMALTASAS MSTEMIQHCS  480
MPDISISRSS NHTSAPLLDG KESELCTIVE EDEHHGELRT QNAALSPGDW ADSLTNISFG  540
DLLSEPSENV DANGIDSDCP RTSDCLQQTP FTCDSFDAAI AAHIRKHGCR PSSEPPVLSH  600
APCIWDAEET CDAFSFQKNV FSENVDAFEK FPSQTFGEIA ETRAPQPGRE AEALSDADKT  660
FIDDPMDKSE SDGHTSDSSI RDFNSLTDIY WPDSLGALDL DIPSCRYRTD DLILSDSLGG  720
LNRLIASSLD AFQNCSFFGS EKKDSATVEA GETASVSDLK ISTEGXSICK WRKLELAEED  780
EHFDPEVSHQ KCLVFT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027123102.1	0.0	TSL-kinase interacting protein 1-like isoform X1
Refseq	XP_027123103.1	0.0	TSL-kinase interacting protein 1-like isoform X1
Swissprot	Q8LJT8	0.0	TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBL	A0A068V802	0.0	A0A068V802_COFCA; Uncharacterized protein
STRING	VIT_08s0040g01460.t01	0.0	(Vitis vinifera)