PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9362_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family G2-like
Protein Properties Length: 161aa    MW: 17947.4 Da    PI: 7.5871
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9362_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like42.51.4e-13127155129
                             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtP 29 
                                         kprlrWt eLHerFv+av+qLGG++   P
  cra_locus_9362_iso_1_len_562_ver_3 127 KPRLRWTAELHERFVDAVTQLGGPDSLFP 155
                                         79**********************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-12124155IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-8127155IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
XSRGVFRLPF LQAHPVPSLP LPLHSPRLWK SLLTLQGRPI SVNSVFLQEF YTFQEKKEQE  60
SLGCCQFQVR KEMYSSARLP IVQTLPLEGA AGTGGGEFHH HQHGPIMSLD GTNLPGDACL  120
VLTTDPKPRL RWTAELHERF VDAVTQLGGP DSLFPFSLLC L
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027116786.13e-30protein PHR1-LIKE 3-like
SwissprotQ94A572e-28PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A068TU042e-29A0A068TU04_COFCA; Uncharacterized protein
STRINGXP_010550833.13e-27(Tarenaya hassleriana)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]