PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_94135_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 108aa    MW: 11337.4 Da    PI: 7.8474
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_94135_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002785107123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          y+C+ C+++F++   L  H  +H
  cra_locus_94135_iso_1_len_361_ver_3  85 YQCKTCNRCFPSFQALGGHRASH 107
                                          9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.31E-583107No hitNo description
PfamPF139123.3E-1084108IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.09785108IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MAAPSSSYYS SAPASAGGYA DSSSPSNSCE FTQTTLDEED MANCLILLAQ GRRRSKKSPE  60
SVLATMSNNN SNLNASTSAA AAEAYQCKTC NRCFPSFQAL GGHRASHK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428462.21e-23zinc finger protein ZAT5
RefseqXP_006493540.11e-23zinc finger protein ZAT5-like
SwissprotQ681X44e-14ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A067DQV62e-22A0A067DQV6_CITSI; Uncharacterized protein
TrEMBLV4SM302e-22V4SM30_9ROSI; Uncharacterized protein
STRINGXP_006493540.14e-23(Citrus sinensis)
STRINGXP_006428462.13e-23(Citrus clementina)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]