PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9430_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 193aa MW: 21853.9 Da PI: 10.2619

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9430_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.5	6.9e-20	85	180	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkang 73 f+ ++++ +v+ s l +p +fa+e+ + +++tl++++g+ W+v+ i + k ++ +++ +GW Fv++n+ cra_locus_9430_iso_6_len_1037_ver_3 85 FVRIMKKFNVSGSYTLKIPYQFARENLP--DCRTEITLRNLKGKCWTVNSIPTTKVQTlHTFCGGWMAFVRDND 156 566777778889999*********64..48889***********8877777789999******* PP --TT-EEEEEE-SSSEE..EEEEE-S CS B3 74 LkegDfvvFkldgrsefelvvkvfrk 99 ++ gD+++F+l++ ++e++v++fr+ cra_locus_9430_iso_6_len_1037_ver_3 157 IQMGDICIFELVD--KQEMRVHIFRN 180 ******986..6778***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.9E-27	78	181	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-27	81	187	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.53E-22	83	179	No hit	No description
PROSITE profile	PS50863	14.381	85	181	IPR003340	B3 DNA binding domain
SMART	SM01019	7.4E-17	85	181	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-17	85	180	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
XEKGIHKTKW LTKVDKKGHG HDRVKFGSAL KSSPISSQSI SRELVIWEPG SEGRLGSHTK 60 GCVSMKSAPE EKVAAQSFVS SFPHFVRIMK KFNVSGSYTL KIPYQFAREN LPDCRTEITL 120 RNLKGKCWTV NSIPTTKVQT LHTFCGGWMA FVRDNDIQMG DICIFELVDK QEMRVHIFRN 180 SIKGIDYQTG RGQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092259.1	6e-87	B3 domain-containing protein Os01g0723500-like isoform X2
Refseq	XP_027094873.1	6e-87	B3 domain-containing protein Os01g0723500-like isoform X2
TrEMBL	A0A068UIZ6	1e-84	A0A068UIZ6_COFCA; Uncharacterized protein
STRING	XP_009781392.1	9e-78	(Nicotiana sylvestris)